CADRE Genome Views Funded by the Fungal Research Trust
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CADRE Downloads

CADRE Download and Documentation

CADRE Downloads
Overview
Various CADRE data sets and documents are available from our ftp site:

   For HTML access, click here.
   For command line access, ftp to the host site ftp.bioinf.man.ac.uk, using the username anonymous with your e-mail address as the password.

In both cases, for the root CADRE directory, change directories to pub/cadre/.
Data available
Details below provide information on the directory structures and data available:

an_organism/  The organism of interest.
org_x_y_z/  The database version, e.g., afu_1_2_1, is the directory containing data from A. fumigatus version 1.2.1. The three letter codes for each genome are: afu - A. fumigatus; ani - A. nidulans; and aor - A. oryzae.
xml/  TIGR XML formatted files for each annotated supercontig/contig.
genbank/  Genbank formatted files for each annotated supercontig/contig.
docs/  Various documents concerning the assembly and genome.
fasta/  FASTA files.

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