Various CADRE data sets and documents are available from our ftp site:
For HTML access, click here.
For command line access, ftp to the host site ftp.bioinf.man.ac.uk, using the username anonymous with your e-mail address as the password.
In both cases, for the root CADRE directory, change directories to pub/cadre/.
Data available
Details below provide information on the directory structures and data available:
an_organism/
The organism of interest.
org_x_y_z/
The database version, e.g., afu_1_2_1, is the directory containing data from A. fumigatus version 1.2.1. The three letter codes for each genome are: afu - A. fumigatus; ani - A. nidulans; and aor - A. oryzae.
xml/
TIGR XML formatted files for each annotated supercontig/contig.
genbank/
Genbank formatted files for each annotated supercontig/contig.
docs/
Various documents concerning the assembly and genome.